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Medical accounting software is essential for companies, enabling teams to improve billing accuracy and strengthen financial management. However, finding the right solution can be challenging, given the many options available.

Using my experience with finance and accounting software, I tested and compared several of the top medical accounting software programs available. Then, I compiled my results into detailed reviews to help you find the best software for your needs.

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Best Medical Accounting Software Summary

This comparison chart summarizes pricing details for my top medical accounting software selections, helping you find the best one for your budget and business needs.

Tools Price
Zoho Books From $15/month (billed annually)
Striven From $35/user/month (min 5 users)
ZarMoney From $20/month (up to 2 users)
AccountEdge From $20/month
AccountingSeed Pricing upon request
Patriot Accounting From $20/month
Ellucian Banner Finance Pricing upon request
Odoo From $24.90/user/month (billed annually)
Kashoo From $20/month
Wave From $14/month
Compare Software Specs Side by Side

Compare Software Specs Side by Side

Use our comparison chart to review and evaluate software specs side-by-side.

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How To Choose Medical Accounting Software

It’s easy to get bogged down in long feature lists and complex pricing structures. Here's a checklist of factors to remember to help you stay focused as you work through your unique software selection process.

FactorWhat to Consider
ScalabilityEnsure the software can grow with your practice, handling more patients and data as your business expands
IntegrationsTo streamline operations, look for compatibility with your existing systems, like EHRs and billing tools. 
CustomizabilityCheck if you can tailor features to suit your processes and reporting needs. 
Ease of UseConsider whether the interface is intuitive for your team to reduce training time and errors
BudgetCompare costs against your budget, including hidden fees or long-term commitments. 
Security SafeguardsVerify compliance with healthcare regulations like HIPAA to protect patient data. 
Support OptionsLook for accessible customer support, such as live chat or phone, for quick issue resolution. 
Reporting ToolsAssess the quality of reporting features to help you make informed financial decisions. 

Best Medical Accounting Software Reviews

Here are my in-depth summaries of the top medical accounting software on my shortlist. These reviews cover key features, pros and cons, integrations, and ideal use cases for each tool, helping you find the best fit.

Best for automation

  • Free trial + free plan available
  • From $15/month (billed annually)
Visit Website
Rating: 4.5/5

Zoho Books is an online accounting software for small to medium-sized businesses. It handles key business functions like invoicing, expense tracking, and financial reporting.

Why I picked Zoho Books: Zoho Books makes it easy to automate repetitive accounting tasks, letting your team set up workflows for invoicing, payments, and reminders. This saves time and reduces errors, allowing you to focus on strategic decisions instead of daily tasks. It’s an efficient tool for optimizing your accounting processes.

Standout features & integrations:

Features include a client portal, which allows clients to view and pay invoices online, enhancing customer interaction. The software also offers multi-currency support, allowing you to manage global transactions easily. Additionally, Zoho Books provides an inventory management system that helps keep track of stock levels.

Integrations include Zoho CRM, PayPal, Stripe, G Suite, Slack, Dropbox, Office 365, Mailchimp, and Zapier.

Pros and cons

Pros:

  • Efficient workflow setup
  • Effective inventory management
  • Strong automation capabilities

Cons:

  • Limited mobile functionality
  • Occasional reporting limitations

Best for integrated CRM

  • 7-day free trial
  • From $35/user/month (min 5 users)
Visit Website
Rating: 4.5/5

Striven is cloud-based business management software designed for small to mid-sized companies. It manages key business functions like accounting, project management, and CRM.

Why I picked Striven: Striven combines CRM features with accounting, letting you manage customer relationships and finances in one place. You can track customer interactions and financial transactions together, boosting team collaboration. Its reporting tools give insights into both finances and customer data. Plus, it supports project management, helping your team stay organized and on schedule.

Standout features & integrations:

Features include job costing, which lets your team accurately track project expenses and profitability. The software’s inventory management capabilities ensure you can maintain optimal stock levels. Automated workflows reduce manual entry, keeping your processes efficient and error-free.

Integrations include QuickBooks, Stripe, PayPal, Mailchimp, Google Calendar, Slack, Zoom, Dropbox, and G Suite.

Pros and cons

Pros:

  • Strong reporting tools
  • Comprehensive project management
  • Integrated CRM capabilities

Cons:

  • Occasional software lag
  • No native payroll integration

Best for unlimited users

  • 14-day free trial
  • From $20/month (up to 2 users)
Visit Website
Rating: 4.7/5

ZarMoney is a cloud-based accounting software designed for medical businesses of all sizes. It performs key functions such as invoicing, inventory management, and financial reporting.

Why I picked ZarMoney: ZarMoney lets you grant unlimited user access, making it great for growing teams. You can easily set user permissions so everyone has the right level of access. Its reporting tools provide insights into your finances, and the inventory management features help you keep your stock organized and up to date.

Standout features & integrations:

Features include a customizable dashboard that lets your team view critical data at a glance. Automated workflows help streamline your accounting processes and reduce manual tasks. The software also offers a quoting system that simplifies creating and managing estimates.

Integrations include PayPal, Stripe, Authorize.Net, Google Drive, Etsy, Shopify, Amazon Seller, WooCommerce, and eBay.

Pros and cons

Pros:

  • Strong inventory management
  • Comprehensive reporting tools
  • Unlimited user access

Cons:

  • Occasional lag with larger data sets
  • No native payroll integration

Best for small practices

  • 30-day free trial
  • From $20/month
Visit Website
Rating: 3.9/5

Why I picked AccountEdge: AccountEdge provides a solid option for small practices, with on-premise security and remote access through the AccountEdge Connect add-on. It’s more affordable than QuickBooks and a good choice if you’re on a budget. It covers all your essential accounting needs, and its user-friendly interface helps your team get up to speed fast.

Standout features & integrations:

Features include managing inventory, tracking time and billing, and maintaining contact management. Your team can also benefit from advanced data management and reporting tools, which help keep financial operations organized. The software's expense tracking feature is another standout, allowing you to maintain control over finances.

Integrations include Shopify, UPS, ShipStation, PayPal, Stripe, BigCommerce, Magento, WooCommerce, and Mailchimp.

Pros and cons

Pros:

  • Cost-effective for small businesses
  • Reliable desktop application
  • Advanced data management

Cons:

  • Requires local system maintenance
  • Slower updates compared to cloud solutions

Best for Salesforce users

  • Free demo available
  • Pricing upon request

AccountingSeed is cloud-based accounting software for small to medium-sized businesses, particularly those already using Salesforce. It handles essential functions like general ledger management, billing, and financial reporting.

Why I picked AccountingSeed: AccountingSeed connects directly with Salesforce, making it a good fit if you’re already on that platform. This setup lets you manage accounting and customer data in one place. The software offers customizable reporting tools that adapt to your business needs, and its dual focus on accounting and CRM makes data management easier for your team.

Standout features & integrations:

Features include project accounting capabilities that let your team track project finances accurately. The software also offers robust multi-currency support, ideal for international operations. Its flexible billing options also cater to different customer needs, enhancing your billing accuracy.

Integrations include Salesforce, Avalara, Stripe, PayPal, Expensify, Bill.com, Docusign, and QuickBooks.

Pros and cons

Pros:

  • Supports project accounting
  • Customizable reporting tools
  • Smooth Salesforce integration

Cons:

  • Requires Salesforce knowledge
  • Limited mobile app features

Best for payroll services

  • Free demo available
  • From $20/month

Patriot Accounting is an online accounting software tailored for small businesses. It performs business functions such as accounting, payroll processing, and tax filing.

Why I picked Patriot Accounting: Patriot Accounting aims to simplify payroll for small teams. You can handle payroll taxes and direct deposits without hassle, so your team gets paid on time. The setup wizard walks you through the initial configuration, saving you time. You’ll also get detailed payroll reports to help you comply with regulations.

Standout features & integrations:

Features include automatic tax calculations, which ensure your tax filings are accurate and timely. The software's expense tracking helps your team manage and categorize business expenses efficiently. Patriot Accounting also offers a customizable chart of accounts, allowing you to tailor the software to your business needs.

Integrations include QuickBooks, ADP, TSheets, Gusto, and Plaid.

Pros and cons

Pros:

  • Guided setup process
  • Detailed payroll reports
  • Strong payroll capabilities

Cons:

  • Limited mobile app functionality
  • Requires internet connection

Best for comprehensive fund accounting

  • Free demo available
  • Pricing upon request

Ellucian Banner Finance is a cloud-based solution for organizations needing specialized accounting functionalities. It supports core financial management tasks and is tailored for fund accounting needs.

Why I picked Ellucian Banner Finance: Ellucian Banner Finance offers fund accounting tools that help your team track funds across multiple sources and ensure proper allocations. You get detailed budgeting features that make it easier to plan and adjust based on real-time data. With integrated financial reporting, your team can generate reports that provide clear insights into fund utilization. Additionally, Ellucian Banner Finance supports compliance management, keeping your organization aligned with essential regulatory standards.

Standout features & integrations:

Features include automated budget transfers, helping you quickly reallocate funds where they’re needed. You’ll find user-defined financial categories, allowing for more detailed tracking specific to your organization’s needs. The tool also provides expense encumbrance features, letting you see committed funds at a glance for better budget control.

Integrations include Workday, Oracle, Salesforce, Blackbaud, PeopleSoft, Google Workspace, Microsoft 365, SAP, Banner Document Management, and Tableau.

Pros and cons

Pros:

  • Automated workflows
  • Real-time financial insights
  • Tailored for educational needs

Cons:

  • Limited mobile features
  • Higher learning curve

Best for modular features

  • Free plan available
  • From $24.90/user/month (billed annually)

Odoo is a highly customizable business management software designed for companies of various sizes. It performs essential business functions such as accounting, CRM, and inventory management.

Why I picked Odoo: Odoo lets you add or remove applications as your business needs change. This flexibility makes it ideal if you need specific tools without extras. You can easily integrate accounting with other business functions. This adaptability helps your business grow and adjust over time.

Standout features & integrations:

Features include an intuitive drag-and-drop interface that simplifies workflow management. Your team can use real-time communication tools to collaborate effectively within the platform. Odoo also provides comprehensive reporting capabilities, helping you make informed decisions based on data insights.

Integrations include PayPal, eBay, Amazon, QuickBooks, Microsoft Dynamics, Shopify, WooCommerce, Stripe, and Magento.

Pros and cons

Pros:

  • Strong real-time communication
  • Easy-to-scale operations
  • Highly customizable modules

Cons:

  • Limited support for niche industries
  • Requires technical knowledge

Best for easy invoicing

  • 14-day free trial
  • From $20/month

Kashoo is an online accounting software tailored for small business owners and freelancers. It offers key business functions like invoicing, expense tracking, and financial reporting.

Why I picked Kashoo: Kashoo’s simple design makes invoicing easy with automated features. You can create, send, and track invoices effortlessly, saving your team time. It also gives you real-time financial insights, helping you make quick decisions. With a straightforward setup and intuitive interface, Kashoo is good if you’re after no-fuss accounting tools.

Standout features & integrations:

Features include automatic bank reconciliation, which helps you match transactions with your bank records without hassle. Your team can also utilize the receipt scanning feature to track expenses. Additionally, Kashoo offers a project-tracking feature suitable for monitoring project-based financials.

Integrations include Square, Stripe, BluePay, FreshBooks, and Paychex.

Pros and cons

Pros:

  • Real-time financial insights
  • Strong customer support
  • Quick setup process

Cons:

  • Limited customization options
  • No inventory management

Best free accounting tool

  • Free plan available
  • From $14/month

Wave is an online accounting software specifically designed for small businesses and freelancers. It handles essential functions like invoicing, expense tracking, and financial reporting.

Why I picked Wave: Wave is a free tool with a range of features for small businesses. It allows you to manage invoices and payments easily, making it a smart choice for budget-conscious teams. The simple dashboard gives a clear view of your finances, which is especially helpful for startups and freelancers looking to keep track of their money.

Standout features & integrations:

Features include receipt scanning, which allows you to easily capture and store expense receipts. The software's personal finance management tools help your team keep business and personal finances separate. Wave also offers an invoicing system that lets you quickly create professional invoices.

Integrations include PayPal, Etsy, Shoeboxed, Zapier, Google Sheets, Stripe, QuickBooks, and Shopify.

Pros and cons

Pros:

  • Easy receipt scanning
  • Professional invoicing tools
  • Free for accounting functions

Cons:

  • Limited customization options
  • Basic reporting capabilities

Other Medical Accounting Software

Here are some additional medical accounting software options that didn’t make it onto my shortlist but are still worth checking out.

  1. ZipBooks

    For solo practices

  2. FreshBooks

    For time tracking

  3. Xero

    For small business workflows

  4. Sage Intacct

    For AI financial management

  5. NetSuite

    For all-in-one ERP integration

  6. Kareo

    For mobile medical billing

  7. Multiview ERP

    For customizable ERP

  8. QuickBooks Online

    For cloud-based solutions

  9. AdvancedMD

    For private practices

  10. QuickBooks Enterprise

    For large practices

Medical Accounting Software Selection Criteria

When selecting the best medical accounting software for this list, I considered everyday buyer needs and pain points, such as compliance with healthcare regulations and managing complex billing processes. I also used the following framework to keep my evaluation structured and fair.

Core Functionality (25% of total score)
To be considered for inclusion in this list, each solution had to fulfill these everyday use cases:

  • Manage patient billing
  • Track financial transactions
  • Generate financial reports
  • Handle insurance claims
  • Ensure compliance with regulations

Additional Standout Features (25% of total score)
To help further narrow down the competition, I also looked for unique features, such as:

  • Advanced analytics dashboards
  • Customizable templates
  • Integration with EHR systems
  • Automated reminders for payments
  • Multi-currency support

Usability (10% of total score)
To get a sense of the usability of each system, I considered the following:

  • Intuitive user interface
  • Clear navigation menus
  • Minimal learning curve
  • Responsive design for mobile use
  • Quick access to key features

Onboarding (10% of total score)
To evaluate the onboarding experience for each platform, I considered the following:

  • Availability of training videos
  • Interactive product tours
  • Comprehensive webinars
  • Access to chatbots for assistance
  • Pre-built templates for setup

Customer Support (10% of total score)
To assess each software provider’s customer support services, I considered the following:

  • 24/7 availability
  • Multichannel support options
  • Knowledgeable support staff
  • Prompt response times
  • Access to a help center or FAQ

Value For Money (10% of total score)
To evaluate the value for money of each platform, I considered the following:

  • Competitive pricing
  • Range of features offered
  • Flexibility of pricing plans
  • Hidden costs or fees
  • Return on investment

Customer Reviews (10% of total score)
To get a sense of overall customer satisfaction, I considered the following when reading customer reviews:

  • Overall satisfaction ratings
  • Frequency of positive feedback
  • Common complaints or issues
  • User testimonials
  • Recommendations by industry experts

In my research, I sourced countless product updates, press releases, and release logs from different medical accounting software vendors. Here are some of the emerging trends I’m keeping an eye on.

  • AI-driven analytics: AI is being used to provide deeper insights into financial data. Tools like Xero and QuickBooks are implementing AI to predict cash flow trends and identify anomalies, helping businesses make informed decisions quickly.
  • Blockchain for security: Blockchain technology is being explored to enhance transaction security and transparency. Some vendors are experimenting with blockchain to ensure data integrity and prevent fraud, making it an attractive feature for security-conscious users.
  • Telehealth integration: With the rise of telehealth, accounting software is starting to integrate with telehealth platforms. This allows for smooth billing and financial management within virtual care settings, providing convenience for healthcare providers.
  • Patient self-service portals: More software solutions offer patient self-service portals for billing and payments. This trend empowers patients to manage their accounts online, reducing administrative burdens on healthcare staff.
  • Environmental sustainability tracking: Some vendors add features to track ecological impact and sustainability metrics. This trend caters to healthcare providers looking to align with eco-friendly practices and improve their sustainability reporting.

What Is Medical Accounting Software?

Medical accounting software is designed to help healthcare providers manage billing, expenses, and reporting. It’s commonly used by healthcare administrators, accountants, and billing specialists to boost financial accuracy and efficiency. 

Key features like patient billing, insurance claim processing, and financial reporting streamline complex workflows and support compliance with healthcare regulations. These tools add value by improving medical practices' financial health and operational efficiency.

Features Of Medical Accounting Software

When selecting medical accounting software, look for the following key features.

  • Patient billing: Automates invoicing and payment tracking, reducing manual errors and improving cash flow.
  • Insurance claim processing: Streamlines the submission and tracking of insurance claims, saving time and minimizing denials.
  • Financial reporting: Provides detailed insights into financial performance, helping with strategic decision-making and compliance.
  • Time tracking: Allows accurate billing of hours worked, which is essential for practicing billing by time.
  • AI-driven analytics: Offers predictive insights into financial data, assisting in proactive financial planning.
  • Telehealth integration: Supports billing and financial management for virtual care services, aligning with modern healthcare delivery.
  • Inventory management: Helps track medical supplies and equipment, ensuring optimal stock levels.
  • Multi-currency support: Facilitates international transactions by handling different currencies effortlessly.
  • Client portal: Enables patients to manage their accounts online, enhancing transparency and reducing administrative workload.
  • Environmental sustainability tracking: Monitors sustainability metrics, aligning financial practices with eco-friendly goals.

Benefits Of Medical Accounting Software

Implementing medical accounting software provides several benefits for your team and your business. Here are a few you can look forward to.

  • Improved billing accuracy: Automates invoicing and payment tracking, which reduces errors and ensures consistent cash flow.
  • Time savings: Streamlines insurance claim processing and financial reporting, freeing time for more strategic tasks.
  • Enhanced decision-making: Provides detailed financial reports and AI-driven analytics to help you make informed business decisions.
  • Compliance management: Keeps your practice aligned with healthcare regulations through features like insurance claim processing and detailed reporting.
  • Patient empowerment: Offers client portals for patients to manage their accounts, boosting transparency and reducing administrative tasks.
  • Inventory control: Manages medical supplies and equipment, ensuring you always have the right stock levels.
  • Financial flexibility: Supports multi-currency transactions, making it easier to handle international business operations.

Costs & Pricing Of Medical Accounting Software

Selecting medical accounting software requires understanding the various pricing models and plans available. Costs vary based on accounting features, team size, add-ons, etc. The table below summarizes standard plans, their average prices, and the typical features of the best healthcare accounting software solutions.

Plan Comparison Table for Medical Accounting Software

Plan TypeAverage PriceCommon Features
Free Plan$0Basic invoicing, expense tracking, and limited reporting.
Personal Plan$10-$30/user/monthInvoicing, basic reporting, and single-user access.
Business Plan$30-$60/user/monthMulti-user access, advanced reporting, and inventory management.
Enterprise Plan$60-$120/user/monthCustomizable workflows, analytics, and multi-currency support.
A breakdown of plan types, costs, and features for medical accounting software.

Medical Accounting Software FAQs

Here are some answers to common questions about medical accounting software.

How might billing and medical accounting software be used in a medical office?

Accounting and billing software helps streamline patient management tasks like handling patient accounts, collections, and copays. It also manages accounting system back-office and billing functions like accounts payable, accounts receivable, and general ledger features. This integration supports efficient financial management in a medical setting.

What do medical billers use practice management and medical accounting software for?

Medical billers use practice management and medical accounting software to manage patient accounts and view payment history. The software’s dashboards help keep finances organized and ensure prompt payments for services rendered. This capability supports the financial health of medical practices in the healthcare industry.

What are the benefits of integrating medical accounting software with EHR systems?

Integrating healthcare accounting software with EHR systems allows for smooth data sharing between clinical and financial departments. This integration reduces data entry errors, improves billing accuracy, and enhances patient care through better information access. It’s a valuable feature for comprehensive healthcare management.

How can AI enhance the capabilities of medical accounting software?

AI can enhance medical accounting software by providing predictive analytics and automating routine healthcare organization tasks. These capabilities help identify financial trends and anomalies, allowing for proactive decision-making. AI-driven insights contribute to more efficient and informed financial management in medical practices.

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Simon Litt
By Simon Litt

Simon Litt is the editor of The CFO Club, specializing in covering a range of financial topics. His career has seen him focus on both personal and corporate finance for digital publications, public companies, and digital media brands across the globe.